[86] N. Modi, R. Benz, R. E. W. Hancock and U. Kleinekathöfer, Modeling the Ion Selectivity of the Phosphate Specific Channel OprP, J. Phys. Chem. Lett. 3, 3639–3645 (2012).
[85] P. R. Singh, I. Bárcena-Uribarri, N. Modi, U. Kleinekathöfer, R. Benz, M. Winterhalter and K. R. Mahendran, Pulling Peptides Across Nanochannels: Resolving Peptide Binding and Translocation Through the Hetero-oligomeric Channel from Nocardia Farcinica, ACS Nano 6, 10 699–10 707 (2012).
[84] B. Popescu, P. B. Woiczikowski, M. Elstner and U. Kleinekathöfer, Time-Dependent View of Sequential Transport through Molecules with Rapidly Fluctuating Bridges, Phys. Rev. Lett. 109, 176 802 (2012).
[83] M. Namboodiri, J. Liebers, U. Kleinekathöfer and A. Materny, Selective Probing of Vibrational Hot States in Bromine Using Time-Resolved Coherent Anti-Stokes Raman Scattering, J. Phys. Chem. A 116, 11 341–11 346 (2012).
[82] N. Modi, M. Winterhalter and U. Kleinekathöfer, Feature Article: Computational Modeling of Ion Transport Through Nanopores, Nanoscale 4, 6166–6180 (2012).
[81] M. Aghtar, J. Liebers, J. Strümpfer, K. Schulten and U. Kleinekathöfer, Juxtaposing Density Matrix and Classical Path-Based Wave Packet Dynamics, J. Chem. Phys. 136, 214 101 (2012).
[80] L. Mühlbacher and U. Kleinekathöfer, Preparational Effects on the Excitation Energy Transfer in the FMO Complex, J. Phys. Chem. B 116, 3900–3906 (2012).
[79] C. Olbrich and U. Kleinekathöfer, From Atomistic Modeling to Electronic Properties of Light-Harvesting Systems, in Quantum Efficiency in Complex Systems, Part II: from Molecular Aggregates to Organic Solar Cells, edited by U. Würfel, M. Thorwart and E. R. Weber, vol. 85 of Semiconductors and Semimetals, 83–114 (Academic Press, 2011).
[78] N. Modi, P. R. Singh, K. R. Mahendran, R. Schulz, M. Winterhalter and U. Kleinekathöfer, Probing the Transport of Ionic Liquids in Aqueous Solution Through Nanopores, J. Phys. Chem. Lett. 2, 2331–2336 (2011).
[77] C. Olbrich, J. Strümpfer, K. Schulten and U. Kleinekathöfer, Theory and Simulation of the Environmental Effects on FMO Electronic Transitions, J. Phys. Chem. Lett. 2, 1771–1776 (2011).
[76] A. V. Vargiu, F. Collu, R. Schulz, K. M. Pos, M. Zacharias, U. Kleinekathöfer and P. Ruggerone, Effects of the F610A Mutation on Substrate Extrusion in the AcrB Transporter: Explanation and Rationale by Molecular Dynamics Simulations, J. Am. Chem. Soc. 133, 10 704–10 707 (2011).
[75] C. Olbrich, T. L. C. Jansen, J. Liebers, M. Aghtar, J. Strümpfer, K. Schulten, J. Knoester and U. Kleinekathöfer, From Atomistic Modeling to Excitation Dynamics and Two-Dimensional Spectra of the FMO Light-Harvesting Complex, J. Phys. Chem. B 115, 8609–8621 (2011).
[74] U. Kleinekathöfer, B. Isralewitz, M. Dittrich and K. Schulten, Domain Motion of Individual F1-ATPase β-subunits During Unbiased Molecular Dynamics Simulations, J. Phys. Chem. A 115, 7267–7274 (2011).
[73] R. Schulz, A. V. Vargiu, P. Ruggerone and U. Kleinekathöfer, The Role of Water During the Extrusion of Substrates by the Efflux Transporter AcrB, J. Phys. Chem. B 115, 8278–8287 (2011).
[72] C. Olbrich, J. Strümpfer, K. Schulten and U. Kleinekathöfer, Quest for Spatially Correlated Fluctuations in the FMO Light-Harvesting Complex, J. Phys. Chem. B 115, 758–764 (2011).
[71] C. Wagner, C. Olbrich, H. Brutzer, M. Salomo, U. Kleinekathöfer, U. F. Keyser and F. Kremer, TmHU Induced DNA Condensation As Studied with an Optical Tweezers Assisted Force Clamp, J. Biol. Phys. 37, 117–131 (2011).
[70] C. Olbrich, J. Liebers and U. Kleinekathöfer, Modeling of Light-Harvesting in Purple Bacteria Using a Time-Dependent Hamiltonian Approach, phys. stat. sol. (b) 248, 393–398 (2011).
[69] U. Kleinekathöfer, Trendbericht: Quantendynamik Komplexer Systeme, Nachrichten aus der Chemie 58, 334–336 (2010).
[68] K. R. Mahendran, P. R. Singh, J. Arning, S. Stolte, U. Kleinekathöfer and M. Winterhalter, Permeation Through Nanochannels: Revealing Fast Kinetics, J. Phys.: Condens. Matter 22, 454 131 (2010).
[67] C. Olbrich and U. Kleinekathöfer, Time-Dependent Atomistic View on the Electronic Relaxation in Light-Harvesting System II, J. Phys. Chem. B 114, 12 427–12 437 (2010).
[66] G.-Q. Li and U. Kleinekathöfer, Optimal Control of Shot Noise and Fano Factor by External Fields, Eur. Phys. J. B 76, 309–319 (2010).
[65] C. Padurariu, A. F. Amin and U. Kleinekathöfer, Laser-Assisted Electron Transport in Nanoscale Devices, in Nonlinear Dynamics of Nanosystems, edited by G. Radons, B. Rumpf and H. G. Schuster, 369–406 (Wiley-VCH, 2010).
[64] R. Schulz, A. V. Vargiu, F. Collu, U. Kleinekathöfer and P. Ruggerone, Functional Rotation of the Transporter AcrB: Insights into Drug Extrusion from Simulations, PLoS Comput. Biol. 6, e1000 806 (2010).
[63] I. Biro, S. Pezeshki, H. Weingart, M. Winterhalter and U. Kleinekathöfer, Comparing the Temperature-Dependent Conductance of the Two Structurally Similar E. coli Porins OmpC and OmpF, Biophys. J. 98, 1830–1839 (2010).
[62] J. Liebers, A. Scaria, A. Materny and U. Kleinekathöfer, Probing the Vibrational Dynamics of High-lying Electronic States Using Pump-degenerate Four-wave Mixing, Phys. Chem. Chem. Phys. 12, 1351–1356 (2010).
[61] S. Pezeshki, C. Chimerel, A. Bessenov, M. Winterhalter and U. Kleinekathöfer, Understanding Ion Conductance on a Molecular Level: An All-Atom Modeling of the Bacterial Porin OmpF, Biophys. J. 97, 1898–1906 (2009).
[60] T. Kubař, U. Kleinekathöfer and M. Elstner, Solvent Fluctuations Drive the Hole Transfer in DNA: A Mixed Quantum-Classical Study, J. Phys. Chem. B 113, 13 107–13 117 (2009).
[59] J. Liebers, A. Scaria, A. Materny and U. Kleinekathöfer, Ultrafast Vibrational Dynamics in Higher Electronic Excited States of Iodine, J. Raman Spectros. 40, 822–827 (2009).
[58] U. Kleinekathöfer, Time-Local Quantum Master Equations and Their Applications to Dissipative Dynamics and Molecular Wires, in Energy Flow Dynamics in Biomaterial Systems, edited by I. Burghardt, V. May, D. A. Micha and E. Bittner, vol. 93 of Springer Series in Chemical Physics, 339–361 (Springer, 2009).
[57] R. Schulz and U. Kleinekathöfer, Transitions Between Closed and Open Conformations of TolC: The Effects of Ions in Simulations, Biophys. J. 96, 3116–3125 (2009).
[56] A. F. Amin, G.-Q. Li, A. H. Phillips and U. Kleinekathöfer, Coherent Control of the Spin Current Through a Quantum Dot, Eur. Phys. J. B 68, 103–109 (2009).
[55] A. Scaria, J. Liebers, U. Kleinekathöfer and A. Materny, Probing the Contributions of Hot Vibrational States Using Pump-degenerate Four-wave Mixing, Chem. Phys. Lett. 470, 39–43 (2009).
[54] G.-Q. Li, M. Schreiber and U. Kleinekathöfer, Suppressing the Current Through Molecular Wires: Comparison of Two Mechanisms, New J. Phys. 10, 085 005 (2008).
[53] C. Chimerel, L. Movileanu, S. Pezeshki, M. Winterhalter and U. Kleinekathöfer, Transport at the Nanoscale: Temperature Dependence of Ion Conductance, Eur. Biophys. J. 38, 121–125 (2008).
[52] G.-Q. Li, S. Welack, M. Schreiber and U. Kleinekathöfer, Tailoring Current Flow Patterns Through Molecular Wires Using Shaped Optical Pulses, Phys. Rev. B 77, 075 321–1–5 (2008).
[51] G.-Q. Li, M. Schreiber and U. Kleinekathöfer, Time-dependent Suppression of Current Through Molecular Junctions, phys. stat. sol. (b) 245, 2720–2724 (2008).
[50] G.-Q. Li, U. Kleinekathöfer and M. Schreiber, Treatment of Laser-field Effects on a Molecular Wire and Its Coupling to the Leads, J. Lumin. 128, 1078–1080 (2008).
[49] J. Liebers, U. Kleinekathöfer and V. May, Sequences of Ultrafast Non-resonant Multiphoton Transitions in a Three-electronic Level Molecule, Chem. Phys. 347, 229–242 (2008).
[48] S. Pezeshki, M. Schreiber and U. Kleinekathöfer, Shaping Femtosecond Coherent Anti-stokes Raman Spectra Using Optimal Control Theory, Phys. Chem. Chem. Phys. 10, 2058–2066 (2008).
[47] U. Kleinekathöfer, Decomposition of Spectral Densities: Application to Dissipative Dynamics, Spectra and Molecular Wires, in Dynamics of Open Quantum Systems, edited by K. H. Hughes, 20–24 (CCP6, 2007).
[46] G.-Q. Li, M. Schreiber and U. Kleinekathöfer, Coherent Laser Control of the Current Through Molecular Junctions, EPL 79, 27 006–1–6 (2007).
[45] M. Schröder, M. Schreiber and U. Kleinekathöfer, Reduced Dynamics of Coupled Harmonic and Anharmonic Oscillators Using Higher-order Perturbation Theory, J. Chem. Phys. 126, 114 102–1–10 (2007).
[44] M. Schröder, M. Schreiber and U. Kleinekathöfer, A Time-dependent Modified Redfield Theory for Absorption Spectra Applied to Light-harvesting Systems, J. Lumin. 125, 126–132 (2007).
[43] U. Kleinekathöfer, G.-Q. Li, S. Welack and M. Schreiber, Coherent Destruction of the Current Through Molecular Wires Using Short Laser Pulses, phys. stat. sol. (b) 243, 3775–3781 (2006).
[42] U. Kleinekathöfer, G.-Q. Li, S. Welack and M. Schreiber, Switching the Current Through Model Molecular Wires with Gaussian Laser Pulses, Europhys. Lett. 75, 139–145 (2006).
[41] S. Welack, U. Kleinekathöfer and M. Schreiber, Laser-driven Molecular Wires Studied by a Non-Markovian Density Matrix Approach, J. Lumin. 119 & 120, 462–467 (2006).
[40] U. Kleinekathöfer, G.-Q. Li and M. Schreiber, Density Matrix Theory for Reductive Electron Transfer in DNA, J. Lumin. 119 & 120, 91–95 (2006).
[39] S. Welack, M. Schreiber and U. Kleinekathöfer, The Influence of Ultra-fast Laser Pulses on Electron Transfer in Molecular Wires Studied by a Non-Markovian Density Matrix Approach, J. Chem. Phys. 124, 044 712–1–9 (2006).
[38] M. Schröder, U. Kleinekathöfer and M. Schreiber, Calculation of Absorption Spectra for Light-harvesting Systems Using Non-Markovian Approaches As Well As Modified Redfield Theory, J. Chem. Phys. 124, 084 903–1–14 (2006).
[37] U. Kleinekathöfer, M. Schröder and M. Schreiber, Absorption Spectra for a Model Light-harvesting System Using Non-Markovian Theories, J. Lumin. 112, 461–464 (2005).
[36] U. Kleinekathöfer, Non-Markovian Theories Based on the Decomposition of the Spectral Density, J. Chem. Phys. 121, 2505 (2004).
[35] M. Schröder and U. Kleinekathöfer, Monte Carlo Method for Propagating Multi-dimensional Wave Packets, phys. stat. sol. (b) 241, 2157–2167 (2004).
[34] A. Novikov, U. Kleinekathöfer and M. Schreiber, Coherent-state Path Integral Approach to the Damped Harmonic Oscillator, J. Phys. A: Math. Gen. 37, 3019–3040 (2004).
[33] M. Schreiber, I. Barvík, P. Heřman, I. Kondov and U. Kleinekathöfer, Non-Markovian Effects in the Anisotropy of Fluorescence in LH2 Units, J. Lumin. 108, 137–141 (2004).
[32] A. Novikov, U. Kleinekathöfer and M. Schreiber, The Mapping Approach in the Path Integral Formalism Applied to Curve-crossing Systems, Chem. Phys. 296, 149–158 (2004).
[31] U. Kleinekathöfer, I. Barvík, P. Heřman, I. Kondov and M. Schreiber, Memory Effects in the Fluorescence Depolarization Dynamics Studied Within the B850 Ring of Purple Bacteria, J. Phys. Chem. B 107, 14 094–14 102 (2003).
[30] I. Kondov, U. Kleinekathöfer and M. Schreiber, Stochastic Unraveling of Redfield Master Equations and Its Application to Electron Transfer Problems, J. Chem. Phys. 119, 6635–6646 (2003).
[29] M. Schreiber, I. Kondov and U. Kleinekathöfer, Numerical Simulation of Electron Transfer Rates in Betaine-30, Nonlin. Opt. 29, 595–601 (2002).
[28] I. Barvík, I. Kondov, P. Heřman, M. Schreiber and U. Kleinekathöfer, Femtosecond Dynamics in the Anisotropy of Emission in LH2 Units, Nonlin. Opt. 29, 167–172 (2002).
[27] U. Kleinekathöfer, I. Kondov and M. Schreiber, Stochastic Unraveling of Time-local Quantum Master Equations Beyond the Lindblad Class, Phys. Rev. E 66, 037 701 (2002).
[26] T. Mančal, U. Kleinekathöfer and V. May, Femtosecond Laser Pulse Control of Electron Transfer, J. Chem. Phys. 117, 636–646 (2002).
[25] V. Čápek and U. Kleinekathöfer, On Homogeneous Generalized Master Equations, J. Phys. A: Math. Gen. 35, 5521–5524 (2002).
[24] A. Damjanović, I. Kosztin, U. Kleinekathöfer and K. Schulten, Excitons in a Photosynthetic Light-Harvesting System: A Combined Molecular Dynamics, Quantum Chemistry and Polaron Model Study, Phys. Rev. E 65, 031 919 (2002).
[23] T. Sachse and U. Kleinekathöfer, Generalized Heitler-London Theory for H3: A Comparison of the Surface Integral Method with Perturbation Theory, Eur. Phys. J. D 18, 61–68 (2002).
[22] P. Heřman, U. Kleinekathöfer, I. Barvík and M. Schreiber, Influence of Static and Dynamic Disorder on the Anisotropy of Emission in the Ring Antenna Subunits of Purple Bacteria Photosynthetic Systems, Chem. Phys. 275, 1–13 (2002).
[21] P. Heřman, U. Kleinekathöfer, I. Barvík and M. Schreiber, Exciton Scattering in Light-harvesting Systems of Purple Bacteria, J. Lumin. 94&95, 447–450 (2001).
[20] M. Schreiber, I. Kondov and U. Kleinekathöfer, A Density Matrix Approach to Photoinduced Electron Injection, J. Lumin. 94&95, 471–474 (2001).
[19] U. Kleinekathöfer, I. Kondov and M. Schreiber, Perturbative Treatment of Intercenter Coupling in the Framework of Redfield Theory, Chem. Phys. 268, 121–130 (2001).
[18] I. Kondov, U. Kleinekathöfer and M. Schreiber, Efficiency of Different Numerical Methods for Solving Redfield Equations, J. Chem. Phys. 114, 1497–1504 (2001).
[17] U. Kleinekathöfer, Ground State Potentials for Alkaline Earth-Helium Diatoms Calculated by the Surface Integral Method, Chem. Phys. Lett. 324, 403–410 (2000).
[16] D. Kilin, U. Kleinekathöfer and M. Schreiber, Electron Transfer in Porphyrin Complexes in Different Solutions, J. Phys. Chem. A 104, 5413–5421 (2000).
[15] M. Schreiber, I. Kondov and U. Kleinekathöfer, Different Direct Integrators for Redfield Equations Applied to Electron Transfer Dynamics, J. Mol. Liq. 86, 77–84 (2000).
[14] U. Kleinekathöfer, T. I. Sachse, K. T. Tang, J. P. Toennies and C. L. Yiu, Three-body Exchange Energies in H3 and He3 Calculated by the Surface Integral Method, J. Chem. Phys. 113, 948–956 (2000).
[13] U. Kleinekathöfer, M. Lewerenz and M. Mladenović, Long Range Binding in Alkali-Helium Pairs, Phys. Rev. Lett. 83, 4717–4720 (1999).
[12] M. Nest, U. Kleinekathöfer, M. Schreiber and P. Saalfrank, The Mapped Fourier Method for Scattering Problems, Chem. Phys. Lett. 313, 665–669 (1999).
[11] M. Schreiber, D. Kilin and U. Kleinekathöfer, Comparison of Two Models for Bridge-assisted Charge Transfer, J. Lumin. 83&84, 235–240 (1999).
[10] U. Kleinekathöfer and D. J. Tannor, Extension of the Mapped Fourier Method to Time-dependent Problems, Phys. Rev. E 60, 4926–4933 (1999).
[9] U. Kleinekathöfer, K. T. Tang, J. P. Toennies and C. L. Yiu, The Generalized Heitler-London Theory for H3 Potential Energy Surfaces, J. Chem. Phys. 111, 3377–3386 (1999).
[8] M. Schreiber, D. Kilin and U. Kleinekathöfer, Photo-induced Intermolecular Charge Transfer in Porphyrin Complexes, in Excitonic Processes in Condensed Matter, edited by R. T. Williams and W. M. Yen, 99–104 (The Electrochemical Society, 1998).
[7] U. Kleinekathöfer, S. H. Patil, K. T. Tang and J. P. Toennies, A Boundary Condition Determined Wave Function for the H2 Molecule, vol. 72, 1361–1375 (1998).
[6] U. Kleinekathöfer, K. T. Tang, J. P. Toennies and C. L. Yiu, Van Der Waals Potentials of He2, Ne2 and Ar2 with the Exchange Energy Calculated by the Surface Integral Method, J. Chem. Phys. 107, 9502–9513 (1997).
[5] U. Kleinekathöfer, S. H. Patil, K. T. Tang and J. P. Toennies, A Boundary Condition Determined Wave Function for the Ground State of Helium and Isoelectronic Ions, Phys. Rev. A 54, 2840–2849 (1996).
[4] C. Johann, U. Kleinekathöfer, K. T. Tang and J. P. Toennies, Generalized Heitler-London Theory with Exchange Energy by the Surface Integral Method: An Application to the Alkali-Metal Dimer Cations, Chem. Phys. Lett. 257, 651–657 (1996).
[3] U. Kleinekathöfer, K. T. Tang, J. P. Toennies and C. L. Yiu, Potentials for Some Rare Gas and Alkali-Helium Systems Calculated from the Surface Integral Method, Chem. Phys. Lett. 249, 257–263 (1996).
[2] U. Kleinekathöfer, K. T. Tang, J. P. Toennies and C. L. Yiu, Angular Momentum Coupling in the Exchange Energy of Multielectron Systems, J. Chem. Phys. 103, 6617–6630 (1995).
[1] U. Kleinekathöfer, Line Defects in Quasi-one-dimensional Systems: Orthogonality Exponents and Electron Density, Phys. Rev. B 48, 4816–4822 (1993).